View sphinx_external_toc on Snyk Open Source Advisor (2023)

A sphinx extension that allows the documentation site-map (a.k.a Table of Contents) to be defined external to the documentation files.As used by Jupyter Book!

In normal Sphinx documentation, the documentation site-map is defined via a bottom-up approach - adding toctree directives within pages of the documentation.

This extension facilitates a top-down approach to defining the site-map structure, within a single YAML file.

It also allows for documents not specified in the ToC to be auto-excluded.

User Guide

Sphinx Configuration

Add to your conf.py:

extensions = ["sphinx_external_toc"]external_toc_path = "_toc.yml" # optional, default: _toc.ymlexternal_toc_exclude_missing = False # optional, default: False

Note the external_toc_path is always read as a Unix path, and can either be specified relative to the source directory (recommended) or as an absolute path.

Basic Structure

A minimal ToC defines the top level root key, for a single root document file:

root: intro

The value of the root key will be a path to a file, in Unix format (folders split by /), relative to the source directory, and can be with or without the file extension.

:::{note}This root file will be set as the master_doc.:::

Document files can then have a subtrees key - denoting a list of individual toctrees for that document - and in-turn each subtree should have a entries key - denoting a list of children links, that are one of:

• file: path to a single document file in Unix format, with or without the file extension (as for root)
• glob: path to one or more document files via Unix shell-style wildcards (similar to fnmatch, but single stars don't match slashes.)
• url: path for an external URL (starting e.g. http or https)

:::{important}Each document file can only occur once in the ToC!:::

This can proceed recursively to any depth.

root: introsubtrees:- entries: - file: doc1 subtrees: - entries: - file: doc2 subtrees: - entries: - file: doc3 - url: https://example.com - glob: subfolder/other*

This is equivalent to having a single toctree directive in intro, containing doc1,and a single toctree directive in doc1, with the :glob: flag and containing doc2, https://example.com and subfolder/other*.

As a shorthand, the entries key can be at the same level as the file, which denotes a document with a single subtree.For example, this file is exactly equivalent to the one above:

root: introentries:- file: doc1 entries: - file: doc2 entries: - file: doc3- url: https://example.com- glob: subfolder/other*

File and URL titles

By default, the initial header within a file document will be used as its title in generated Table of Contents.With the title key you can set an alternative title for a document. and also for url:

root: introsubtrees:- entries: - file: doc1 title: Document 1 Title - url: https://example.com title: Example URL Title

ToC tree options

Each subtree can be configured with a number of options (see also sphinx toctree options):

• caption (string): A title for the whole the subtree, e.g. shown above the subtree in ToCs
• hidden (boolean): Whether to show the ToC within (inline of) the document (default False).By default it is appended to the end of the document, but see also the tableofcontents directive for positioning of the ToC.
• maxdepth (integer): A maximum nesting depth to use when showing the ToC within the document (default -1, meaning infinite).
• numbered (boolean or integer): Automatically add numbers to all documents within a subtree (default False).If set to True, all sub-trees will also be numbered based on nesting (e.g. with 1.1 or 1.1.1),or if set to an integer then the numbering will only be applied to that depth.
• reversed (boolean): If True then the entries in the subtree will be listed in reverse order (default False).This can be useful when using glob entries.
• titlesonly (boolean): If True then only the first heading in the document will be shown in the ToC, not other headings of the same level (default False).

These options can be set at the level of the subtree:

root: introsubtrees:- caption: Subtree Caption hidden: False maxdepth: 1 numbered: True reversed: False titlesonly: True entries: - file: doc1 subtrees: - titlesonly: True entries: - file: doc2

or, if you are using the shorthand for a single subtree, set options under an options key:

root: introoptions: caption: Subtree Caption hidden: False maxdepth: 1 numbered: True reversed: False titlesonly: Trueentries:- file: doc1 options: titlesonly: True entries: - file: doc2

You can also use the top-level defaults key, to set default options for all subtrees:

root: introdefaults: titlesonly: Trueoptions: caption: Subtree Caption hidden: False maxdepth: 1 numbered: True reversed: Falseentries:- file: doc1 entries: - file: doc2

:::{warning}numbered should not generally be used as a default, since numbering cannot be changed by nested subtrees, and sphinx will log a warning.:::

:::{note}By default, title numbering restarts for each subtree.If you want want this numbering to be continuous, check-out the sphinx-multitoc-numbering extension.:::

Using different key-mappings

For certain use-cases, it is helpful to map the subtrees/entries keys to mirror e.g. an output LaTeX structure.

The format key can be used to provide such mappings (and also initial defaults).Currently available:

• jb-article:
  • Maps entries -> sections
  • Sets the default of titlesonly to true
• jb-book:
  • Maps the top-level subtrees to parts
  • Maps the top-level entries to chapters
  • Maps other levels of entries to sections
  • Sets the default of titlesonly to true

For example:

defaults: titlesonly: trueroot: indexsubtrees:- entries: - file: doc1 entries: - file: doc2

is equivalent to:

format: jb-bookroot: indexparts:- chapters: - file: doc1 sections: - file: doc2

:::{important}These change in key names do not change the output site-map structure.:::

Add a ToC to a page's content

By default, the toctree generated per document (one per subtree) are appended to the end of the document and hidden (then, for example, most HTML themes show them in a side-bar).But if you would like them to be visible at a certain place within the document body, you may do so by using the tableofcontents directive:

ReStructuredText:

.. tableofcontents::

MyST Markdown:

```{tableofcontents}```

Currently, only one tableofcontents should be used per page (all toctree will be added here), and only if it is a page with child/descendant documents.

Note, this will override the hidden option set for a subtree.

Excluding files not in ToC

By default, Sphinx will build all document files, regardless of whether they are specified in the Table of Contents, if they:

1. Have a file extension relating to a loaded parser (e.g. .rst or .md)
2. Do not match a pattern in exclude_patterns

To automatically add any document files that do not match a file or glob in the ToC to the exclude_patterns list, add to your conf.py:

external_toc_exclude_missing = True

Note that, for performance, files that are in hidden folders (e.g. in .tox or .venv) will not be added to exclude_patterns even if they are not specified in the ToC.You should exclude these folders explicitly.

:::{important}This feature is not currently compatible with orphan files.:::

Command-line

This package comes with the sphinx-etoc command-line program, with some additional tools.

To see all options:

$ sphinx-etoc --helpUsage: sphinx-etoc [OPTIONS] COMMAND [ARGS]... Command-line for sphinx-external-toc.Options: --version Show the version and exit. -h, --help Show this message and exit.Commands: from-project Create a ToC file from a project directory. migrate Migrate a ToC from a previous revision. parse Parse a ToC file to a site-map YAML. to-project Create a project directory from a ToC file.

To build a template project from only a ToC file:

$ sphinx-etoc to-project -p path/to/site -e rst path/to/_toc.yml

Note, you can also add additional files in meta/create_files amd append text to the end of files with meta/create_append, e.g.

root: introentries:- glob: doc*meta: create_append: intro: | This is some appended text create_files: - doc1 - doc2 - doc3

To build a ToC file from an existing site:

$ sphinx-etoc from-project path/to/folder

Some rules used:

• Files/folders will be skipped if they match a pattern added by -s (based on fnmatch Unix shell-style wildcards)
• Sub-folders with no content files inside will be skipped
• File and folder names will be sorted by natural order
• If there is a file called index (or the name set by -i) in any folder, it will be treated as the index file, otherwise the first file by ordering will be used.

The command can also guess a title for each file, based on its path:

• The folder name is used for index files, otherwise the file name
• Words are split by _
• The first "word" is removed if it is an integer

For example, for a project with files:

index.rst1_a_title.rst11_another_title.rst.hidden_file.rst.hidden_folder/index.rst1_a_subfolder/index.rst2_another_subfolder/index.rst2_another_subfolder/other.rst3_subfolder/1_no_index.rst3_subfolder/2_no_index.rst14_subfolder/index.rst14_subfolder/subsubfolder/index.rst14_subfolder/subsubfolder/other.rst

will create the ToC:

$ sphinx-etoc from-project path/to/folder -i index -s ".*" -e ".rst" -troot: indexentries:- file: 1_a_title title: A title- file: 11_another_title title: Another title- file: 1_a_subfolder/index title: A subfolder- file: 2_another_subfolder/index title: Another subfolder entries: - file: 2_another_subfolder/other title: Other- file: 3_subfolder/1_no_index title: No index entries: - file: 3_subfolder/2_no_index title: No index- file: 14_subfolder/index title: Subfolder entries: - file: 14_subfolder/subsubfolder/index title: Subsubfolder entries: - file: 14_subfolder/subsubfolder/other title: Other

API

The ToC file is parsed to a SiteMap, which is a MutableMapping subclass, with keys representing docnames mapping to a Document that stores information on the toctrees it should contain:

import yamlfrom sphinx_external_toc.parsing import parse_toc_yamlpath = "path/to/_toc.yml"site_map = parse_toc_yaml(path)yaml.dump(site_map.as_json())

Would produce e.g.

root: introdocuments: doc1: docname: doc1 subtrees: [] title: null intro: docname: intro subtrees: - caption: Subtree Caption numbered: true reversed: false items: - doc1 titlesonly: true title: nullmeta: {}

Development Notes

Questions / TODOs:

• Add additional top-level keys, e.g. appendices (see https://github.com/sphinx-doc/sphinx/issues/2502) and bibliography
• Using external_toc_exclude_missing to exclude a certain file suffix:currently if you had files doc.md and doc.rst, and put doc.md in your ToC,it will add doc.rst to the excluded patterns but then, when looking for doc.md,will still select doc.rst (since it is first in source_suffix).Maybe open an issue on sphinx, that doc2path should respect exclude patterns.
• Integrate https://github.com/executablebooks/sphinx-multitoc-numbering into this extension? (or upstream PR)
• document suppressing warnings
• test against orphan file
• https://github.com/executablebooks/sphinx-book-theme/pull/304
• CLI command to generate toc from existing documentation toctrees (and then remove toctree directives)
• test rebuild on toc changes (and document how rebuilds are controlled when toc changes)
• some jupyter-book issues point to potential changes in numbering, based on where the toctree is in the document.So could look into placing it e.g. under the first heading/title